PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 93aa    MW: 9611.97 Da    PI: 10.9344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718330genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-066688223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +C+ C+k+F++   L++H +  H
  676718330 66 PCGSCKKTFNSEGALESHTKAkH 88
               6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5366593IPR007087Zinc finger, C2H2
PfamPF128742.8E-56787No hitNo description
PROSITE patternPS0002806788IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
AETRKKRAHE AAPKTPVSAK KAKTEVTPKK TEEKKKGGPA TPHPAKKGGK TPTAATPTPK  60
SAGQVPCGSC KKTFNSEGAL ESHTKAKHSA TAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291703.13e-32hypothetical protein CARUB_v10017869mg
SwissprotQ9FVE62e-24HDT1_ARATH; Histone deacetylase HDT1
TrEMBLR0FQZ93e-32R0FQZ9_9BRAS; Uncharacterized protein
STRINGAT3G44750.16e-22(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-09histone deacetylase 3